GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csativus_Cucsa.124940 Cucsa.124940	scaffold01001	761817	762937	Phytozome	v1.0	Cucumis_sativus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csativus_Cucsa.124940.1 Cucsa.124940.1 PAC:16961791	High	No	1121		Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -25.183 AMFE: -0.658 GC content %: 38.269

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).