GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csativus_Cucsa.134600 Cucsa.134600	scaffold01043	230283	232523	Phytozome	v1.0	Cucumis_sativus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csativus_Cucsa.134600.1 Cucsa.134600.1 PAC:16962826	High	No	601		Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -26.955 AMFE: -0.618 GC content %: 43.594
Csativus_Cucsa.134600.2 Cucsa.134600.2 PAC:16962827	High	No	625		Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -27.008 AMFE: -0.623 GC content %: 43.360

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).