GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csativus_Cucsa.176750 Cucsa.176750	scaffold01225	859378	862502	Phytozome	v1.0	Cucumis_sativus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csativus_Cucsa.176750.1 Cucsa.176750.1 PAC:16966926	High	No	1022		Get ORF Coding potential... Type: noncoding Potential: -0.733 Folding energies... MFEI: -23.933 AMFE: -0.635 GC content %: 37.671
Csativus_Cucsa.176750.2 Cucsa.176750.2 PAC:16966927	High	No	876		Get ORF Coding potential... Type: noncoding Potential: -0.696 Folding energies... MFEI: -25.388 AMFE: -0.666 GC content %: 38.128
Csativus_Cucsa.176750.3 Cucsa.176750.3 PAC:16966928	High	No	863		Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -25.098 AMFE: -0.660 GC content %: 38.007

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).