Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csativus_Cucsa.181450 Cucsa.181450 |
scaffold01241 | 14597 | 17606 | Phytozome | v1.0 | Cucumis_sativus | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csativus_Cucsa.181450.1 Cucsa.181450.1 PAC:16967394 |
Low | No | 684 | Get ORF Coding potential... Type: noncoding Potential: -0.314 Folding energies... MFEI: -25.424 AMFE: -0.661 GC content %: 38.450 | |
Csativus_Cucsa.181450.2 Cucsa.181450.2 PAC:16967395 |
Low | No | 761 | Get ORF Coding potential... Type: noncoding Potential: -0.353 Folding energies... MFEI: -24.757 AMFE: -0.645 GC content %: 38.371 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csativus_Cucsa.181450.1 | SwissProt | 2015-06-01 | Q9C1W5 | 5.0e-15 |
Csativus_Cucsa.181450.2 | SwissProt | 2015-06-01 | Q9C1W5 | 6.0e-15 |