Gene
Csativus Cucsa.273390
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Csativus_Cucsa.273390 Cucsa.273390 |
scaffold02511 | 483805 | 486112 | Phytozome | v1.0 | Cucumis_sativus | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Csativus_Cucsa.273390.1 Cucsa.273390.1 PAC:16973814 |
High | No | 859 | Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -26.414 AMFE: -0.643 GC content %: 41.094 | |
| Csativus_Cucsa.273390.2 Cucsa.273390.2 PAC:16973815 |
High | No | 1071 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -26.284 AMFE: -0.687 GC content %: 38.282 | |
| Csativus_Cucsa.273390.3 Cucsa.273390.3 PAC:16973816 |
High | No | 856 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -26.355 AMFE: -0.643 GC content %: 41.005 | |
| Csativus_Cucsa.273390.4 Cucsa.273390.4 PAC:16973817 |
High | No | 1068 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -25.824 AMFE: -0.676 GC content %: 38.202 | |
| Csativus_Cucsa.273390.5 Cucsa.273390.5 PAC:16973818 |
High | No | 868 | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -26.336 AMFE: -0.646 GC content %: 40.783 | |
| Csativus_Cucsa.273390.6 Cucsa.273390.6 PAC:16973819 |
High | No | 1065 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -25.371 AMFE: -0.666 GC content %: 38.122 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
