Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csativus_Cucsa.312980 Cucsa.312980 |
scaffold02995 | 2279490 | 2281938 | Phytozome | v1.0 | Cucumis_sativus | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csativus_Cucsa.312980.1 Cucsa.312980.1 PAC:16976941 |
Low | No | 562 | Get ORF Coding potential... Type: noncoding Potential: -0.058 Folding energies... MFEI: -21.940 AMFE: -0.636 GC content %: 34.520 | |
Csativus_Cucsa.312980.2 Cucsa.312980.2 PAC:16976942 |
Low | No | 629 | Get ORF Coding potential... Type: noncoding Potential: -0.086 Folding energies... MFEI: -16.486 AMFE: -0.476 GC content %: 34.658 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csativus_Cucsa.312980.1 | SwissProt | 2015-06-01 | C7J4U3 | 8.0e-16 |
Csativus_Cucsa.312980.2 | SwissProt | 2015-06-01 | C7J4U3 | 7.0e-16 |