GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csativus_Cucsa.317350 Cucsa.317350	scaffold03052	29622	36804	Phytozome	v1.0	Cucumis_sativus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csativus_Cucsa.317350.1 Cucsa.317350.1 PAC:16977139	High	No	1120		Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -24.732 AMFE: -0.625 GC content %: 39.554
Csativus_Cucsa.317350.2 Cucsa.317350.2 PAC:16977140	High	No	958		Get ORF Coding potential... Type: noncoding Potential: -0.452 Folding energies... MFEI: -25.198 AMFE: -0.640 GC content %: 39.353
Csativus_Cucsa.317350.3 Cucsa.317350.3 PAC:16977141	High	No	1115		Get ORF Coding potential... Type: noncoding Potential: -0.489 Folding energies... MFEI: -24.861 AMFE: -0.631 GC content %: 39.372
Csativus_Cucsa.317350.5 Cucsa.317350.5 PAC:16977143	High	No	963		Get ORF Coding potential... Type: noncoding Potential: -0.453 Folding energies... MFEI: -24.870 AMFE: -0.629 GC content %: 39.564
Csativus_Cucsa.317350.6 Cucsa.317350.6 PAC:16977144	High	No	756		Get ORF Coding potential... Type: noncoding Potential: -0.388 Folding energies... MFEI: -23.902 AMFE: -0.627 GC content %: 38.095

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).