Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csinensis_orange1.1g030286m.g orange1.1g030286m.g |
scaffold00003 | 1708147 | 1711714 | Phytozome | v1.1 | Citrus_sinensis | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csinensis_orange1.1g034111m orange1.1g034111m PAC:18101689 |
Low | No | 1412 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -26.976 AMFE: -0.653 GC content %: 41.289 | |
Csinensis_orange1.1g034136m orange1.1g034136m PAC:18101690 |
Low | No | 1247 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -28.172 AMFE: -0.659 GC content %: 42.743 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csinensis_orange1.1g034111m | SwissProt | 2015-06-01 | C1C6J3 | 4.0e-5 |
Csinensis_orange1.1g034136m | SwissProt | 2015-06-01 | O73944 | 7.0e-12 |