Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csinensis_orange1.1g033057m.g orange1.1g033057m.g |
scaffold01105 | 33466 | 35332 | Phytozome | v1.1 | Citrus_sinensis | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csinensis_orange1.1g033900m orange1.1g033900m PAC:18121345 |
Low | No | 875 | Get ORF Coding potential... Type: noncoding Potential: -0.046 Folding energies... MFEI: -25.429 AMFE: -0.616 GC content %: 41.257 | |
Csinensis_orange1.1g034200m orange1.1g034200m PAC:18121346 |
Low | No | 615 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -25.366 AMFE: -0.624 GC content %: 40.650 | |
Csinensis_orange1.1g034235m orange1.1g034235m PAC:18121347 |
Low | No | 855 | Get ORF Coding potential... Type: noncoding Potential: -0.101 Folding energies... MFEI: -25.088 AMFE: -0.606 GC content %: 41.404 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csinensis_orange1.1g033900m | SwissProt | 2015-06-01 | Q3ZBP8 | 9.0e-11 |
Csinensis_orange1.1g034200m | SwissProt | 2015-06-01 | Q3ZBP8 | 6.0e-10 |
Csinensis_orange1.1g034235m | SwissProt | 2015-06-01 | Q9CRC3 | 5.0e-11 |