Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csinensis_orange1.1g033129m.g orange1.1g033129m.g |
scaffold00001 | 4660621 | 4661886 | Phytozome | v1.1 | Citrus_sinensis | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csinensis_orange1.1g034105m orange1.1g034105m PAC:18137340 |
Low | Yes | 792 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -28.573 AMFE: -0.684 GC content %: 41.793 | |
Csinensis_orange1.1g034126m orange1.1g034126m PAC:18137339 |
Low | Yes | 1061 | Get ORF Coding potential... Type: noncoding Potential: -0.168 Folding energies... MFEI: -27.484 AMFE: -0.704 GC content %: 39.020 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csinensis_orange1.1g034105m | Rfam | 11.0 | MIR2118 | 2.6e-6 |
Csinensis_orange1.1g034126m | Rfam | 11.0 | MIR2118 | 1.0e-6 |
Csinensis_orange1.1g034105m | SwissProt | 2015-06-01 | P05716 | 6.0e-41 |
Csinensis_orange1.1g034126m | SwissProt | 2015-06-01 | P05716 | 5.0e-40 |