GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csinensis_orange1.1g033743m.g orange1.1g033743m.g	scaffold00016	554353	555382	Phytozome	v1.1	Citrus_sinensis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csinensis_orange1.1g033743m orange1.1g033743m PAC:18109711	Low	Yes	959		Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -32.179 AMFE: -0.726 GC content %: 44.317
Csinensis_orange1.1g034292m orange1.1g034292m PAC:18109712	High	No	991		Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -31.453 AMFE: -0.715 GC content %: 43.996

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).