Gene
Csinensis orange1.1g033803m.g
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Csinensis_orange1.1g033803m.g orange1.1g033803m.g |
scaffold00002 | 2909659 | 2912482 | Phytozome | v1.1 | Citrus_sinensis | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Csinensis_orange1.1g033780m orange1.1g033780m PAC:18091962 |
High | No | 1906 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -23.966 AMFE: -0.717 GC content %: 33.421 | |
| Csinensis_orange1.1g033803m orange1.1g033803m PAC:18091960 |
High | No | 2687 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -22.311 AMFE: -0.703 GC content %: 31.745 | |
| Csinensis_orange1.1g033804m orange1.1g033804m PAC:18091967 |
High | No | 1712 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -23.738 AMFE: -0.715 GC content %: 33.178 | |
| Csinensis_orange1.1g033808m orange1.1g033808m PAC:18091964 |
High | No | 1687 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -23.622 AMFE: -0.714 GC content %: 33.076 | |
| Csinensis_orange1.1g033816m orange1.1g033816m PAC:18091961 |
High | No | 1935 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -23.494 AMFE: -0.708 GC content %: 33.178 | |
| Csinensis_orange1.1g033821m orange1.1g033821m PAC:18091965 |
High | No | 1647 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -23.090 AMFE: -0.708 GC content %: 32.605 | |
| Csinensis_orange1.1g033827m orange1.1g033827m PAC:18091963 |
High | No | 1682 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -23.537 AMFE: -0.712 GC content %: 33.056 | |
| Csinensis_orange1.1g033828m orange1.1g033828m PAC:18091966 |
High | No | 2494 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -21.917 AMFE: -0.693 GC content %: 31.636 | |
| Csinensis_orange1.1g033958m orange1.1g033958m PAC:18091968 |
High | No | 2415 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -21.946 AMFE: -0.696 GC content %: 31.553 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
