Gene
Csinensis orange1.1g033832m.g
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Csinensis_orange1.1g033832m.g orange1.1g033832m.g |
scaffold00274 | 40292 | 44082 | Phytozome | v1.1 | Citrus_sinensis | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Csinensis_orange1.1g033832m orange1.1g033832m PAC:18129533 |
High | No | 856 | Get ORF Coding potential... Type: noncoding Potential: -0.456 Folding energies... MFEI: -23.657 AMFE: -0.629 GC content %: 37.617 | |
| Csinensis_orange1.1g033839m orange1.1g033839m PAC:18129534 |
High | No | 2684 | Get ORF Coding potential... Type: noncoding Potential: -0.591 Folding energies... MFEI: -24.318 AMFE: -0.694 GC content %: 35.060 | |
| Csinensis_orange1.1g033854m orange1.1g033854m PAC:18129535 |
High | No | 990 | Get ORF Coding potential... Type: noncoding Potential: -0.470 Folding energies... MFEI: -23.202 AMFE: -0.633 GC content %: 36.667 | |
| Csinensis_orange1.1g033861m orange1.1g033861m PAC:18129536 |
High | No | 1084 | Get ORF Coding potential... Type: noncoding Potential: -0.513 Folding energies... MFEI: -23.109 AMFE: -0.629 GC content %: 36.716 | |
| Csinensis_orange1.1g033878m orange1.1g033878m PAC:18129537 |
High | No | 1238 | Get ORF Coding potential... Type: noncoding Potential: -0.524 Folding energies... MFEI: -23.304 AMFE: -0.650 GC content %: 35.864 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
