GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csinensis_orange1.1g033936m.g orange1.1g033936m.g	scaffold00214	120330	126287	Phytozome	v1.1	Citrus_sinensis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csinensis_orange1.1g033925m orange1.1g033925m PAC:18120922	High	No	632		Get ORF Coding potential... Type: noncoding Potential: -0.234 Folding energies... MFEI: -23.275 AMFE: -0.588 GC content %: 39.557
Csinensis_orange1.1g033936m orange1.1g033936m PAC:18120921	High	No	628		Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -23.280 AMFE: -0.587 GC content %: 39.650
Csinensis_orange1.1g034559m orange1.1g034559m PAC:18120923	High	No	1088		Get ORF Coding potential... Type: noncoding Potential: -0.566 Folding energies... MFEI: -24.237 AMFE: -0.637 GC content %: 38.051

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).