Gene
Csinensis orange1.1g034014m.g
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Csinensis_orange1.1g034014m.g orange1.1g034014m.g |
scaffold00217 | 27121 | 29977 | Phytozome | v1.1 | Citrus_sinensis | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Csinensis_orange1.1g033998m orange1.1g033998m PAC:18135717 |
High | No | 1133 | Get ORF Coding potential... Type: noncoding Potential: -0.637 Folding energies... MFEI: -24.625 AMFE: -0.637 GC content %: 38.658 | |
| Csinensis_orange1.1g034014m orange1.1g034014m PAC:18135716 |
High | No | 1015 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -22.946 AMFE: -0.599 GC content %: 38.325 | |
| Csinensis_orange1.1g034336m orange1.1g034336m PAC:18135718 |
High | No | 1106 | Get ORF Coding potential... Type: noncoding Potential: -0.740 Folding energies... MFEI: -24.313 AMFE: -0.633 GC content %: 38.427 | |
| Csinensis_orange1.1g034547m orange1.1g034547m PAC:18135719 |
High | No | 1125 | Get ORF Coding potential... Type: noncoding Potential: -0.789 Folding energies... MFEI: -22.969 AMFE: -0.612 GC content %: 37.511 | |
| Csinensis_orange1.1g034817m orange1.1g034817m PAC:18135720 |
High | No | 1098 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -22.541 AMFE: -0.605 GC content %: 37.250 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
