GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csinensis_orange1.1g034134m.g orange1.1g034134m.g	scaffold00008	1212514	1214309	Phytozome	v1.1	Citrus_sinensis	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csinensis_orange1.1g034124m orange1.1g034124m PAC:18138643	High	No	602		Get ORF Coding potential... Type: noncoding Potential: -0.536 Folding energies... MFEI: -26.412 AMFE: -0.593 GC content %: 44.518
Csinensis_orange1.1g034134m orange1.1g034134m PAC:18138641	High	No	799		Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -29.487 AMFE: -0.580 GC content %: 50.814

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).