Gene
Csinensis orange1.1g034143m.g
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Csinensis_orange1.1g034143m.g orange1.1g034143m.g |
scaffold00053 | 356009 | 358222 | Phytozome | v1.1 | Citrus_sinensis | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Csinensis_orange1.1g034119m orange1.1g034119m PAC:18094413 |
High | No | 779 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -24.134 AMFE: -0.548 GC content %: 44.031 | |
| Csinensis_orange1.1g034143m orange1.1g034143m PAC:18094412 |
High | No | 720 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -23.417 AMFE: -0.522 GC content %: 44.861 | |
| Csinensis_orange1.1g034146m orange1.1g034146m PAC:18094414 |
High | No | 821 | Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -24.921 AMFE: -0.565 GC content %: 44.093 | |
| Csinensis_orange1.1g034404m orange1.1g034404m PAC:18094418 |
High | No | 717 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -24.254 AMFE: -0.556 GC content %: 43.654 | |
| Csinensis_orange1.1g034424m orange1.1g034424m PAC:18094417 |
High | No | 1077 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -23.324 AMFE: -0.587 GC content %: 39.740 | |
| Csinensis_orange1.1g034428m orange1.1g034428m PAC:18094416 |
High | No | 759 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -24.928 AMFE: -0.570 GC content %: 43.742 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
