GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csinensis_orange1.1g034248m.g orange1.1g034248m.g	scaffold00250	30444	32353	Phytozome	v1.1	Citrus_sinensis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csinensis_orange1.1g034248m orange1.1g034248m PAC:18134461	High	No	1619		Get ORF Coding potential... Type: noncoding Potential: -0.356 Folding energies... MFEI: -22.829 AMFE: -0.651 GC content %: 35.083
Csinensis_orange1.1g034476m orange1.1g034476m PAC:18134463	High	No	634		Get ORF Coding potential... Type: noncoding Potential: -0.160 Folding energies... MFEI: -22.792 AMFE: -0.580 GC content %: 39.274
Csinensis_orange1.1g034481m orange1.1g034481m PAC:18134462	High	No	631		Get ORF Coding potential... Type: noncoding Potential: -0.159 Folding energies... MFEI: -22.504 AMFE: -0.575 GC content %: 39.144

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).