GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csinensis_orange1.1g034294m.g orange1.1g034294m.g	scaffold00482	73044	75889	Phytozome	v1.1	Citrus_sinensis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csinensis_orange1.1g034294m orange1.1g034294m PAC:18117745	High	No	505		Get ORF Coding potential... Type: noncoding Potential: -0.595 Folding energies... MFEI: -25.386 AMFE: -0.602 GC content %: 42.178
Csinensis_orange1.1g034311m orange1.1g034311m PAC:18117747	High	No	678		Get ORF Coding potential... Type: noncoding Potential: -0.740 Folding energies... MFEI: -26.549 AMFE: -0.621 GC content %: 42.773
Csinensis_orange1.1g034325m orange1.1g034325m PAC:18117746	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -0.703 Folding energies... MFEI: -27.181 AMFE: -0.628 GC content %: 43.289

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).