GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csinensis_orange1.1g034316m.g orange1.1g034316m.g	scaffold00129	377385	380174	Phytozome	v1.1	Citrus_sinensis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csinensis_orange1.1g034316m orange1.1g034316m PAC:18130149	High	No	1347		Get ORF Coding potential... Type: noncoding Potential: -0.609 Folding energies... MFEI: -23.756 AMFE: -0.669 GC content %: 35.486
Csinensis_orange1.1g034577m orange1.1g034577m PAC:18130150	High	No	1424		Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -23.525 AMFE: -0.665 GC content %: 35.393
Csinensis_orange1.1g034840m orange1.1g034840m PAC:18130151	High	No	1342		Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -23.659 AMFE: -0.667 GC content %: 35.469

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).