GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csinensis_orange1.1g034604m.g orange1.1g034604m.g	scaffold00001	71057	73704	Phytozome	v1.1	Citrus_sinensis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csinensis_orange1.1g034604m orange1.1g034604m PAC:18137368	High	No	2494		Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -23.340 AMFE: -0.632 GC content %: 36.929
Csinensis_orange1.1g034608m orange1.1g034608m PAC:18137369	High	No	1277		Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -25.043 AMFE: -0.628 GC content %: 39.859
Csinensis_orange1.1g034613m orange1.1g034613m PAC:18137370	High	No	2535		Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -23.148 AMFE: -0.625 GC content %: 37.041

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).