Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csinensis_orange1.1g034647m.g orange1.1g034647m.g |
scaffold00029 | 617409 | 620077 | Phytozome | v1.1 | Citrus_sinensis | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csinensis_orange1.1g034646m orange1.1g034646m PAC:18131736 |
Low | No | 712 | Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -24.480 AMFE: -0.609 GC content %: 40.169 | |
Csinensis_orange1.1g034647m orange1.1g034647m PAC:18131735 |
Low | No | 680 | Get ORF Coding potential... Type: noncoding Potential: -0.736 Folding energies... MFEI: -23.809 AMFE: -0.593 GC content %: 40.147 | |
Csinensis_orange1.1g034652m orange1.1g034652m PAC:18131737 |
Low | No | 734 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -22.943 AMFE: -0.595 GC content %: 38.556 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csinensis_orange1.1g034646m | SwissProt | 2015-06-01 | Q3ZC71 | 2.0e-5 |
Csinensis_orange1.1g034647m | SwissProt | 2015-06-01 | Q3ZC71 | 2.0e-5 |
Csinensis_orange1.1g034652m | SwissProt | 2015-06-01 | Q3ZC71 | 2.0e-5 |