GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csinensis_orange1.1g034746m.g orange1.1g034746m.g	scaffold00001	1746136	1748000	Phytozome	v1.1	Citrus_sinensis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csinensis_orange1.1g034731m orange1.1g034731m PAC:18135955	High	No	685		Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -27.197 AMFE: -0.629 GC content %: 43.212
Csinensis_orange1.1g034746m orange1.1g034746m PAC:18135954	High	No	662		Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -27.281 AMFE: -0.629 GC content %: 43.353

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).