Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csinensis_orange1.1g034917m.g orange1.1g034917m.g |
scaffold00001 | 294009 | 295795 | Phytozome | v1.1 | Citrus_sinensis | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csinensis_orange1.1g034917m orange1.1g034917m PAC:18136396 |
Low | No | 807 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -24.226 AMFE: -0.643 GC content %: 37.670 | |
Csinensis_orange1.1g035116m orange1.1g035116m PAC:18136397 |
Low | No | 620 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -24.113 AMFE: -0.628 GC content %: 38.387 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csinensis_orange1.1g034917m | SwissProt | 2015-06-01 | P38824 | 1.0e-3 |
Csinensis_orange1.1g035116m | SwissProt | 2015-06-01 | P38824 | 1.0e-3 |