Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Csinensis_orange1.1g034933m.g orange1.1g034933m.g |
scaffold00385 | 162343 | 163210 | Phytozome | v1.1 | Citrus_sinensis | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Csinensis_orange1.1g034933m orange1.1g034933m PAC:18109927 |
Low | No | 525 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -25.238 AMFE: -0.569 GC content %: 44.381 | |
Csinensis_orange1.1g034949m orange1.1g034949m PAC:18109929 |
Low | No | 517 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -25.261 AMFE: -0.563 GC content %: 44.874 | |
Csinensis_orange1.1g034954m orange1.1g034954m PAC:18109928 |
Low | No | 462 | Get ORF Coding potential... Type: noncoding Potential: -0.754 Folding energies... MFEI: -24.437 AMFE: -0.591 GC content %: 41.342 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Csinensis_orange1.1g034954m | SwissProt | 2015-06-01 | Q54HG4 | 2.0e-7 |
Csinensis_orange1.1g034933m | SwissProt | 2015-06-01 | Q54HG4 | 3.0e-7 |
Csinensis_orange1.1g034949m | SwissProt | 2015-06-01 | Q54HG4 | 3.0e-7 |