GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Csinensis_orange1.1g035213m.g orange1.1g035213m.g	scaffold10114	1306	2061	Phytozome	v1.1	Citrus_sinensis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Csinensis_orange1.1g035201m orange1.1g035201m PAC:18117023	High	No	661		Get ORF Coding potential... Type: noncoding Potential: -0.434 Folding energies... MFEI: -25.371 AMFE: -0.633 GC content %: 40.091
Csinensis_orange1.1g035213m orange1.1g035213m PAC:18117022	High	No	527		Get ORF Coding potential... Type: noncoding Potential: -0.376 Folding energies... MFEI: -24.782 AMFE: -0.602 GC content %: 41.176

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).