GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
CsubellipsoideaC169_Genemark1.4825_g CsubellipsoideaC169_Genemark1.4825_g	scaffold_9	1932233	1932842	Phytozome	v2.0	Coccomyxa_subellipsoidea_C-169	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
CsubellipsoideaC169_64042 CsubellipsoideaC169_64042 PAC:27388650	Low	No	351		Get ORF Coding potential... Type: coding Potential: 0.172 Folding energies... MFEI: -37.892 AMFE: -0.662 GC content %: 57.265

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).