Gene

CsubellipsoideaC169 estExt Genemark1.C 250008

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

CsubellipsoideaC169_estExt_Genemark1.C_250008
CsubellipsoideaC169_estExt_Genemark1.C_250008
scaffold_25 54701 56460 Phytozome v2.0 Coccomyxa_subellipsoidea_C-169
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

CsubellipsoideaC169_68339
CsubellipsoideaC169_68339
PAC:27394130
High No 1143
Coding potential...
Type: noncoding Potential: -0.688
Folding energies...
MFEI: -31.269 AMFE: -0.614
GC content
%: 50.919


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

CsubellipsoideaC169_estExt_Genemark1.C_250008.png