GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
CsubellipsoideaC169_estExt_fgenesh1_pm.C_10212 CsubellipsoideaC169_estExt_fgenesh1_pm.C_10212	scaffold_1	2701005	2701997	Phytozome	v2.0	Coccomyxa_subellipsoidea_C-169	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
CsubellipsoideaC169_52207 CsubellipsoideaC169_52207 PAC:27389261	High	No	724		Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -29.558 AMFE: -0.665 GC content %: 44.475

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).