Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
CsubellipsoideaC169_estExt_fgenesh1_pm.C_180034 CsubellipsoideaC169_estExt_fgenesh1_pm.C_180034 |
scaffold_18 | 463368 | 464326 | Phytozome | v2.0 | Coccomyxa_subellipsoidea_C-169 | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
CsubellipsoideaC169_54555 CsubellipsoideaC169_54555 PAC:27394424 |
Low | Yes | 782 | Get ORF Coding potential... Type: noncoding Potential: -0.726 Folding energies... MFEI: -29.616 AMFE: -0.635 GC content %: 46.675 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
CsubellipsoideaC169_54555 | Rfam | 11.0 | mir-999 | 0.0024 |