GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.A00819 Eucgr.A00819	Chr01	12091780	12093170	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.A00819.1 Eucgr.A00819.1 PAC:32048866	High	No	972		Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -27.263 AMFE: -0.632 GC content %: 43.107
Egrandis_Eucgr.A00819.2 Eucgr.A00819.2 PAC:32048867	High	No	989		Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -26.663 AMFE: -0.642 GC content %: 41.557

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).