GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.C00601 Eucgr.C00601	Chr03	11462800	11466606	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.C00601.1 Eucgr.C00601.1 PAC:32038859	High	No	695		Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -27.640 AMFE: -0.570 GC content %: 48.489
Egrandis_Eucgr.C00601.2 Eucgr.C00601.2 PAC:32038860	High	No	632		Get ORF Coding potential... Type: noncoding Potential: -0.700 Folding energies... MFEI: -27.911 AMFE: -0.562 GC content %: 49.684

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).