GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.C03436 Eucgr.C03436	Chr03	72257819	72258568	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.C03436.1 Eucgr.C03436.1 PAC:32036345	High	No	750		Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -32.213 AMFE: -0.669 GC content %: 48.133

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).