GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.G00729 Eucgr.G00729	Chr07	10760555	10765518	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.G00729.1 Eucgr.G00729.1 PAC:32071012	High	No	1289		Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.920 AMFE: -0.610 GC content %: 44.143
Egrandis_Eucgr.G00729.2 Eucgr.G00729.2 PAC:32071013	High	No	1414		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -26.832 AMFE: -0.616 GC content %: 43.564
Egrandis_Eucgr.G00729.3 Eucgr.G00729.3 PAC:32071014	High	No	1284		Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -26.994 AMFE: -0.611 GC content %: 44.159

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).