GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.G03322 Eucgr.G03322	Chr07	53910889	53912615	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.G03322.1 Eucgr.G03322.1 PAC:32071289	High	No	682		Get ORF Coding potential... Type: noncoding Potential: -0.123 Folding energies... MFEI: -24.355 AMFE: -0.565 GC content %: 43.109
Egrandis_Eucgr.G03322.2 Eucgr.G03322.2 PAC:32071290	High	No	753		Get ORF Coding potential... Type: noncoding Potential: -0.135 Folding energies... MFEI: -24.648 AMFE: -0.578 GC content %: 42.629

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).