GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.H03682 Eucgr.H03682	Chr08	50525518	50528078	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.H03682.1 Eucgr.H03682.1 PAC:32041437	High	No	499		Get ORF Coding potential... Type: noncoding Potential: -0.578 Folding energies... MFEI: -29.359 AMFE: -0.654 GC content %: 44.890
Egrandis_Eucgr.H03682.2 Eucgr.H03682.2 PAC:32041438	High	No	1048		Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -29.361 AMFE: -0.641 GC content %: 45.802
Egrandis_Eucgr.H03682.3 Eucgr.H03682.3 PAC:32041439	High	No	891		Get ORF Coding potential... Type: noncoding Potential: -0.721 Folding energies... MFEI: -30.774 AMFE: -0.656 GC content %: 46.914
Egrandis_Eucgr.H03682.4 Eucgr.H03682.4 PAC:32041440	High	No	936		Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -30.053 AMFE: -0.647 GC content %: 46.474

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).