GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.I01270 Eucgr.I01270	Chr09	23421704	23423753	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.I01270.1 Eucgr.I01270.1 PAC:32065105	High	No	628		Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -29.108 AMFE: -0.566 GC content %: 51.433
Egrandis_Eucgr.I01270.2 Eucgr.I01270.2 PAC:32065106	High	No	714		Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -30.994 AMFE: -0.634 GC content %: 48.880
Egrandis_Eucgr.I01270.3 Eucgr.I01270.3 PAC:32065107	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -30.567 AMFE: -0.626 GC content %: 48.794

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).