GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.J03139 Eucgr.J03139	Chr10	36871176	36872895	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.J03139.1 Eucgr.J03139.1 PAC:32035120	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -28.678 AMFE: -0.625 GC content %: 45.879
Egrandis_Eucgr.J03139.2 Eucgr.J03139.2 PAC:32035121	High	No	574		Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -27.369 AMFE: -0.600 GC content %: 45.645

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).