GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.K01518 Eucgr.K01518	Chr11	18608450	18609253	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.K01518.1 Eucgr.K01518.1 PAC:32066151	High	No	604		Get ORF Coding potential... Type: noncoding Potential: -0.423 Folding energies... MFEI: -29.818 AMFE: -0.587 GC content %: 50.828
Egrandis_Eucgr.K01518.2 Eucgr.K01518.2 PAC:32066152	High	No	631		Get ORF Coding potential... Type: noncoding Potential: -0.428 Folding energies... MFEI: -29.889 AMFE: -0.588 GC content %: 50.872

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).