Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Esalsugineum_Thhalv10001088m.g Thhalv10001088m.g |
scaffold_20 | 259085 | 260974 | Phytozome | v1.0 | Eutrema_salsugineum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Esalsugineum_Thhalv10001088m Thhalv10001088m PAC:20203004 |
Low | No | 643 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -23.344 AMFE: -0.692 GC content %: 33.748 | |
Esalsugineum_Thhalv10001092m Thhalv10001092m PAC:20203005 |
High | No | 297 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -17.003 AMFE: -0.495 GC content %: 34.343 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Esalsugineum_Thhalv10001088m | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-120_SB-I |