GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10002738m.g Thhalv10002738m.g	scaffold_4	1347005	1348005	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10002738m Thhalv10002738m PAC:20196905	High	No	515		Get ORF Coding potential... Type: noncoding Potential: -0.491 Folding energies... MFEI: -24.738 AMFE: -0.579 GC content %: 42.718
Esalsugineum_Thhalv10002750m Thhalv10002750m PAC:20196906	Low	No	531		Get ORF Coding potential... Type: coding Potential: 0.164 Folding energies... MFEI: -25.047 AMFE: -0.571 GC content %: 43.879

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).