Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Esalsugineum_Thhalv10002933m.g Thhalv10002933m.g |
scaffold_4 | 2235753 | 2237215 | Phytozome | v1.0 | Eutrema_salsugineum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Esalsugineum_Thhalv10002933m Thhalv10002933m PAC:20196369 |
Low | No | 759 | Get ORF Coding potential... Type: coding Potential: 0.204 Folding energies... MFEI: -18.669 AMFE: -0.565 GC content %: 33.070 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Esalsugineum_Thhalv10002933m | RepBase (RepeatMasker) | 2014-01-31 | Caulimovirus-1_PTr |