GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10003472m.g Thhalv10003472m.g	scaffold_18	2238863	2239912	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10003472m Thhalv10003472m PAC:20207922	High	No	522		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -21.513 AMFE: -0.553 GC content %: 38.889
Esalsugineum_Thhalv10003473m Thhalv10003473m PAC:20207923	High	No	519		Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -21.252 AMFE: -0.549 GC content %: 38.728

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).