GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10009240m.g Thhalv10009240m.g	scaffold_5	6119687	6120511	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10009240m Thhalv10009240m PAC:20186599	High	No	691		Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -24.096 AMFE: -0.638 GC content %: 37.771
Esalsugineum_Thhalv10009248m Thhalv10009248m PAC:20186600	High	No	473		Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -22.262 AMFE: -0.569 GC content %: 39.112

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).