GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10010860m.g Thhalv10010860m.g	scaffold_16	5220377	5221228	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10010860m Thhalv10010860m PAC:20207673	High	No	607		Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -20.329 AMFE: -0.577 GC content %: 35.255
Esalsugineum_Thhalv10010868m Thhalv10010868m PAC:20207674	High	No	586		Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -20.222 AMFE: -0.570 GC content %: 35.495

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).