GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10015083m.g Thhalv10015083m.g	scaffold_2	3882704	3884140	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10015078m Thhalv10015078m PAC:20205506	High	No	1247		Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -20.593 AMFE: -0.507 GC content %: 40.658
Esalsugineum_Thhalv10015083m Thhalv10015083m PAC:20205505	High	No	858		Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -21.294 AMFE: -0.518 GC content %: 41.142

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).