GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10015681m.g Thhalv10015681m.g	scaffold_2	11577331	11577672	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10015681m Thhalv10015681m PAC:20204230	High	No	342		Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -22.368 AMFE: -0.535 GC content %: 41.813

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).