GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10016114m.g Thhalv10016114m.g	scaffold_2	16920705	16923597	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10016114m Thhalv10016114m PAC:20206630	High	No	429		Get ORF Coding potential... Type: noncoding Potential: -0.734 Folding energies... MFEI: -21.282 AMFE: -0.613 GC content %: 34.732
Esalsugineum_Thhalv10016116m Thhalv10016116m PAC:20206631	High	No	581		Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -21.694 AMFE: -0.523 GC content %: 41.480

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).