GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10022472m.g Thhalv10022472m.g	scaffold_24	464568	467330	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10022470m Thhalv10022470m PAC:20202494	High	No	1039		Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -25.804 AMFE: -0.662 GC content %: 38.980
Esalsugineum_Thhalv10022471m Thhalv10022471m PAC:20202495	High	No	1015		Get ORF Coding potential... Type: noncoding Potential: -0.703 Folding energies... MFEI: -26.167 AMFE: -0.635 GC content %: 41.182
Esalsugineum_Thhalv10022472m Thhalv10022472m PAC:20202493	High	No	1045		Get ORF Coding potential... Type: noncoding Potential: -0.710 Folding energies... MFEI: -26.057 AMFE: -0.669 GC content %: 38.947

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).