GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Esalsugineum_Thhalv10023775m.g Thhalv10023775m.g	scaffold_8	13112351	13114920	Phytozome	v1.0	Eutrema_salsugineum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Esalsugineum_Thhalv10023774m Thhalv10023774m PAC:20201388	High	No	660		Get ORF Coding potential... Type: noncoding Potential: -0.054 Folding energies... MFEI: -19.894 AMFE: -0.532 GC content %: 37.424
Esalsugineum_Thhalv10023775m Thhalv10023775m PAC:20201387	High	No	846		Get ORF Coding potential... Type: noncoding Potential: -0.121 Folding energies... MFEI: -20.177 AMFE: -0.511 GC content %: 39.480

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).